Mark DePristo b7b57ef39a Updating MD5 to reflect canonical ordering of calculation ... -- We should no longer have md5s changing because of hashmaps changing their sort order on us -- Added GenotypeLikelihoodsUnitTests -- Refactored ExactAFCaclculation to put the PL -> QUAL calculation in the GenotypeLikelihoods class to avoid the code copy.		2011-11-19 15:57:33 -05:00
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net/sf	Removed annoying FastaSequenceIndexBuilderProgressListener infrastructure that was just a boolean switch on whether to print progress or not.	2011-07-27 22:06:23 -04:00
org/broadinstitute/sting	Updating MD5 to reflect canonical ordering of calculation	2011-11-19 15:57:33 -05:00