gatk3的最后一个经典版本3.8

Mark DePristo b7b57ef39a Updating MD5 to reflect canonical ordering of calculation ... -- We should no longer have md5s changing because of hashmaps changing their sort order on us -- Added GenotypeLikelihoodsUnitTests -- Refactored ExactAFCaclculation to put the PL -> QUAL calculation in the GenotypeLikelihoods class to avoid the code copy.		2011-11-19 15:57:33 -05:00
public	Updating MD5 to reflect canonical ordering of calculation	2011-11-19 15:57:33 -05:00
settings	Updating the HybridSelectionPipeline for SnpEff 2.0.4 RC3	2011-11-17 14:46:12 -05:00
.gitignore	Minor additions to the shared .gitignore file, now that Mark has checked one in.	2011-10-26 12:24:28 -04:00
LICENSE	One last test...	2011-06-28 19:18:17 -04:00
build.xml	No more hunting down R "resources". As a tradeoff Rscript cannot be specified on the commandline and will be found in the environment path.	2011-10-27 14:17:07 -04:00
ivy.xml	Updating the HybridSelectionPipeline for SnpEff 2.0.4 RC3	2011-11-17 14:46:12 -05:00