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David Roazen 74b51c5c7a Improve test suite tmp file cleanup 
-Make BaseTest.createTempFile() mark any possible corresponding index files for deletion on exit

-Make WalkerTest mark shadow BCF files and auxiliary for deletion on exit

-Make VariantRecalibrationWalkersIntegrationTest mark PDF files for deletion on exit
 		2014-05-27 13:41:44 -04:00
..
VectorPairHMM Changed 'sting' to 'gatk' in the VectorLoglessPairHMM classes and the 2014-05-19 17:36:41 -04:00
c After renaming the packages, instead of updating the JNI library used for testing bwa, moving the classes to the archive. 2014-05-19 17:36:41 -04:00
chainFiles The contig is named MT not M in b36. Delivers PT68890442. 2014-04-08 10:03:47 -04:00
doc Refactored maven directories and java packages replacing "sting" with "gatk". 2014-05-19 17:36:39 -04:00
external-example Refactored maven directories and java packages replacing "sting" with "gatk". 2014-05-19 17:36:39 -04:00
gatk-engine Refactored maven directories and java packages replacing "sting" with "gatk". 2014-05-19 17:36:39 -04:00
gatk-queue Refactored maven directories and java packages replacing "sting" with "gatk". 2014-05-19 17:36:39 -04:00
gatk-queue-extensions-generator Refactored maven directories and java packages replacing "sting" with "gatk". 2014-05-19 17:36:39 -04:00
gatk-queue-extensions-public Fixed GATK docs artifact, moved protected ExampleUG tests. 2014-05-22 21:03:55 -04:00
gatk-root Refactored maven directories and java packages replacing "sting" with "gatk". 2014-05-19 17:36:39 -04:00
gatk-tools-public Improve test suite tmp file cleanup 2014-05-27 13:41:44 -04:00
gatk-utils Changed 'sting' to 'gatk' in the VectorLoglessPairHMM classes and the 2014-05-19 17:36:41 -04:00
gsalib Refactored maven directories and java packages replacing "sting" with "gatk". 2014-05-19 17:36:39 -04:00
java/config Refactored maven directories and java packages replacing "sting" with "gatk". 2014-05-19 17:36:39 -04:00
package-tests Refactored maven directories and java packages replacing "sting" with "gatk". 2014-05-19 17:36:39 -04:00
perl Fixing the liftover script to not require strict VCF header validation. 2013-11-07 09:02:17 -05:00
repo Refactored maven directories and java packages replacing "sting" with "gatk". 2014-05-19 17:36:39 -04:00
pom.xml Refactored maven directories and java packages replacing "sting" with "gatk". 2014-05-19 17:36:39 -04:00