Eric Banks ba150570f3 Updating to use new rod system syntax plus name change for CountRODs		2011-09-19 13:30:32 -04:00
..
examples	Fixed issue reported by chartl where cloned functions lost tags on @Inputs.	2011-09-16 12:46:07 -04:00
lib	moving the example scala scripts to the qscripts package.	2011-07-01 16:14:59 -04:00
DataProcessingPipeline.scala	Just cleaning up	2011-09-07 13:32:40 -04:00
GATKResourcesBundle.scala	Updating to use new rod system syntax plus name change for CountRODs	2011-09-19 13:30:32 -04:00
MethodsDevelopmentCallingPipeline.scala	Changing the VQSR command line syntax back to the parsed tags approach. This cleans up the code and makes sure we won't be parsing the same rod file multiple times. I've tried to update the appropriate qscripts.	2011-09-12 12:17:43 -04:00
PacbioProcessingPipeline.scala	BLASR BAMs and new BWA parameters	2011-08-24 17:04:07 -04:00
StandardVariantEvaluation.scala	new home for the core qscripts	2011-06-30 11:32:06 -04:00