hanna 1896f334d9 Fixed collection of bugs in reads aligning to multiple locations. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1955 348d0f76-0448-11de-a6fe-93d51630548a		2009-11-02 04:02:09 +00:00
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bwa_as_lib.sh	Initial version of BWA/C bindings. Still lots of squirrels roaming the code.	2009-10-28 21:37:49 +00:00
bwa_gateway.cpp	Fixed collection of bugs in reads aligning to multiple locations.	2009-11-02 04:02:09 +00:00
bwa_gateway.h	Fix bug where alignments with indels would be busted because bwa reverses	2009-10-29 21:33:13 +00:00
org_broadinstitute_sting_alignment_bwa_BWACAligner.cpp	Created walkers for alignment, validation.	2009-10-30 15:04:07 +00:00
org_broadinstitute_sting_alignment_bwa_BWACAligner.h	Created walkers for alignment, validation.	2009-10-30 15:04:07 +00:00