gatk3的最后一个经典版本3.8

aaron b6a7ebd3c4 You can now test a single JUnit test from the command line, by specifying the test with the command line parameter -Dsingle=myTestName. ... example: ant test -Dsingle=TraverseReadsTest git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@559 348d0f76-0448-11de-a6fe-93d51630548a		2009-04-29 13:30:47 +00:00
c	Move non-java code out of playground.	2009-03-23 19:31:38 +00:00
doc	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
java	Calculate interval-based statistics for Hybrid Selection	2009-04-29 04:01:24 +00:00
python	Several changes to CovariateCounter walker to print more tables (called vs. observed Q scores), bug fixes to LogisticRecalibrationWalker and LogisticRegressor, and print string functionality added to Pair.	2009-04-28 00:37:48 +00:00
settings	Bumped sam-jdk version to fix bug unzipping bam files.	2009-04-28 20:02:05 +00:00
shell	Move non-java code out of playground.	2009-03-23 19:31:38 +00:00
testdata	Basic logistic regression support for calibrating qualities; mostly for Andrew to experiment with	2009-04-24 19:09:50 +00:00
build.xml	You can now test a single JUnit test from the command line, by specifying the test with the command line parameter -Dsingle=myTestName.	2009-04-29 13:30:47 +00:00
ivy.xml	Added castor dependency.	2009-04-07 22:27:39 +00:00