hanna b69eb208a6 Always create output files, even if no output was written to them. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1627 348d0f76-0448-11de-a6fe-93d51630548a		2009-09-15 17:58:14 +00:00
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bwa	Proof-of-concept perfect read aligner, implemented as described in sec 2.4 of BWA paper. Has successfully aligned a handful of reads. Requires significant cleanup and refactoring.	2009-09-14 21:54:56 +00:00
gatk	Always create output files, even if no output was written to them.	2009-09-15 17:58:14 +00:00
playground	incremental clean-up and changes for VariantEval, moved DiploidGenotype to a better home, and fixed a spelling error.	2009-09-15 04:48:42 +00:00
secondarybase	Cleanup...deprecate FastaSequenceFile2 in favor of IndexedFastaSequenceFile or ReferenceSequenceFile from Picard, depending on the application.	2009-07-08 18:49:08 +00:00
utils	incremental clean-up and changes for VariantEval, moved DiploidGenotype to a better home, and fixed a spelling error.	2009-09-15 04:48:42 +00:00