gatk3的最后一个经典版本3.8

Mark DePristo b69d210255 Bugfix: allow gzip VCF output in multi-threaded GATK output ... -- VariantContextWriterStorage was gzipping the intermediate files that would be merged in, but the mergeInto function couldn't read those outputs, and we'd throw a very strange error. Now tmp. VCFs aren't compressed, even if the final VCF is. Added integrationtest to ensure this behavior works going forward. -- [delivers #47399279]		2013-06-17 12:39:18 -04:00
licensing	Removing the symlink from the private license file	2013-02-09 12:57:44 -05:00
protected	Merge pull request #283 from broadinstitute/md_beagleoutput	2013-06-17 09:31:03 -07:00
public	Bugfix: allow gzip VCF output in multi-threaded GATK output	2013-06-17 12:39:18 -04:00
settings	Rev picard, sam-jdk, tribble, and variant to version 1.91.1453	2013-05-07 14:21:15 -04:00
.gitignore	Detect stuck lock-acquisition calls, and disable file locking for tests	2013-04-24 22:49:02 -04:00
build.xml	Restore scala compilation by default in build.xml	2013-05-31 11:28:29 -04:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Brought all of ReduceReads to fastutils	2013-02-23 22:53:23 -05:00