hanna b69c2d0f70 Cleanup. Remove some unnecessary methods. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2900 348d0f76-0448-11de-a6fe-93d51630548a		2010-02-26 21:50:48 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src	Cleanup. Remove some unnecessary methods.	2010-02-26 21:50:48 +00:00
test/org/broadinstitute/sting	Quick commit in advance of Aaron's. Just a bunch of refactoring (private classes separated out, put in proper package). Also support added for coverage by read group rather than sample.	2010-02-26 16:39:47 +00:00