gatk-3.8/java
chartl b68d6e06b7 Rollback of the previous "fix" and implementation of the real fix.
We totally *do* want to annotate the call if called by another walker. Totally boneheaded misenterpretation of what the code was doing -- Eric, please forgive me for being an idiot.

Instead, change the StingException to what it really should be -- an IllegalStateException, which is not coincidentally already handled by the calling function. 



git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2067 348d0f76-0448-11de-a6fe-93d51630548a
2009-11-18 06:09:24 +00:00
..
config Provide a default logger, some config settings, and some doc updates. 2009-04-29 02:06:05 +00:00
src/org/broadinstitute/sting Rollback of the previous "fix" and implementation of the real fix. 2009-11-18 06:09:24 +00:00
test/org/broadinstitute/sting Added -- 2009-11-18 00:11:13 +00:00