asivache b64e4d1a04 seekForwardOffset changed (improved?): first, compareContigs does *not*, in general, return -1,0 or 1 if no dictionary is available; second, be more flexible in trying to jump to the right contig (current implementation of FastaFile2 will still through an exception if there's no dictionary, but iterator itself behaves transparently) ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@317 348d0f76-0448-11de-a6fe-93d51630548a		2009-04-07 21:42:33 +00:00
..
src/org/broadinstitute/sting	seekForwardOffset changed (improved?): first, compareContigs does *not*, in general, return -1,0 or 1 if no dictionary is available; second, be more flexible in trying to jump to the right contig (current implementation of FastaFile2 will still through an exception if there's no dictionary, but iterator itself behaves transparently)	2009-04-07 21:42:33 +00:00
test/org/broadinstitute/sting/utils/cmdLine	Fix argument parser test case.	2009-03-27 16:05:18 +00:00