gatk-3.8/perl/reports/1KG/RenderTemplate.pl

40 lines
822 B
Perl
Executable File

#!/usr/bin/perl -w
use strict;
use FindBin;
use lib "$FindBin::Bin/../../";
use StingArgs;
use Data::Dumper;
my %args = &getCommandArguments("KVP" => undef, "TEMPLATE" => undef, "TEMPLATE_OUT" => undef);
my %vars;
open(KVP, $args{'KVP'});
while (my $kvpline = <KVP>) {
chomp($kvpline);
my ($key, $value) = split(/\t+/, $kvpline);
$vars{$key} = $value;
}
close(KVP);
open(TEMPLATE, $args{'TEMPLATE'});
open(TEMPLATE_OUT, ">$args{'TEMPLATE_OUT'}");
while (my $line = <TEMPLATE>) {
chomp($line);
while ($line =~ /\$(.+?)\$/) {
if (exists($vars{$1})) {
my ($key, $value) = ($1, $vars{$1});
$line =~ s/\$$key\$/$value/;
} else {
$line =~ s/\$$1\$/unknown/;
}
}
print TEMPLATE_OUT "$line\n";
}
close(TEMPLATE_OUT);
close(TEMPLATE);