aaron 7aa90757ac Moved the iterators over to the StingSAMIterator interface. This will help us ensure that iterators that need to be closed get closed. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@702 348d0f76-0448-11de-a6fe-93d51630548a		2009-05-14 16:52:18 +00:00
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dataSources	Added IterableLocusContextQueue and test. Cleaned up tests, adding BaseTest where it didn't exist. Enhanced test runner to run only classes ending in ...Test.java, so that utility classes can sit alongside the tests but won't be run by JUnit.	2009-05-13 21:32:05 +00:00
executive	Added IterableLocusContextQueue and test. Cleaned up tests, adding BaseTest where it didn't exist. Enhanced test runner to run only classes ending in ...Test.java, so that utility classes can sit alongside the tests but won't be run by JUnit.	2009-05-13 21:32:05 +00:00
iterators	Added an adapter class, that will adapt plain iterators and closeable iterators of SAMRecords into STingSAMIterators. Also unit tests.	2009-05-14 15:17:32 +00:00
traversals	Moved the iterators over to the StingSAMIterator interface. This will help us ensure that iterators that need to be closed get closed.	2009-05-14 16:52:18 +00:00
GATKArgumentCollectionTest.java	intervals_file + genome_loc => intervals.	2009-05-12 01:04:18 +00:00
OutputTrackerTest.java	Added IterableLocusContextQueue and test. Cleaned up tests, adding BaseTest where it didn't exist. Enhanced test runner to run only classes ending in ...Test.java, so that utility classes can sit alongside the tests but won't be run by JUnit.	2009-05-13 21:32:05 +00:00