hanna b61f9af4d7 Cleaning up, preparing to incorporate a better fix for Eric's problems with validation stringency in BAM files opened directly from the walkers. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1222 348d0f76-0448-11de-a6fe-93d51630548a		2009-07-13 01:42:13 +00:00
..
gatk	Until 454 goes far, far away, at least we can completely ignore it	2009-07-10 18:31:53 +00:00
playground	genotyper also needs to have 454 reads filtered out	2009-07-10 23:19:28 +00:00
secondarybase	Cleanup...deprecate FastaSequenceFile2 in favor of IndexedFastaSequenceFile or ReferenceSequenceFile from Picard, depending on the application.	2009-07-08 18:49:08 +00:00
utils	Cleaning up, preparing to incorporate a better fix for Eric's problems with validation stringency in BAM files opened directly from the walkers.	2009-07-13 01:42:13 +00:00