Ami Levy-Moonshine e6ef37de1d Add an option to filter the read bases that are taking into account for the coveraged intervals. For that, new two arguments were added: minBaseQuality and minMappingQuality		2013-11-18 17:29:32 -05:00
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java	Add an option to filter the read bases that are taking into account for the coveraged intervals. For that, new two arguments were added: minBaseQuality and minMappingQuality	2013-11-18 17:29:32 -05:00
scala/test/org/broadinstitute/sting/queue/pipeline/examples	Fix improper dependencies in QScripts used by pipeline tests, and attempt to fix the flawed MisencodedBaseQualityUnitTest	2013-02-27 04:45:53 -05:00