gatk-3.8/java/src/org/broadinstitute/sting/gatk/io
hanna 1bc26f69e9 An attempt to cleanup the Utils directory. Email to follow.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3198 348d0f76-0448-11de-a6fe-93d51630548a
2010-04-19 23:00:08 +00:00
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storage Moving UnifiedGenotyper and VariantAnnotator over to VariantContext system. 2010-03-09 03:41:07 +00:00
stubs An attempt to cleanup the Utils directory. Email to follow. 2010-04-19 23:00:08 +00:00
DirectOutputTracker.java Output stream management fixes. I completely screwed up the output stream management system, but cleverly masked this fact by breaking some other stream management functionality that masked the problem. 2009-09-15 21:06:45 +00:00
OutputTracker.java An attempt to cleanup the Utils directory. Email to follow. 2010-04-19 23:00:08 +00:00
StingSAMFileWriter.java Enhance the I/O management system to support custom headers and set the presorted flag 2010-01-12 18:21:42 +00:00
ThreadLocalOutputTracker.java Support for initialize() and onTraversalDone() output from parallelized walkers. 2009-10-26 20:18:31 +00:00