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arguments
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An attempt to cleanup the Utils directory. Email to follow.
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2010-04-19 23:00:08 +00:00 |
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contexts
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Minor useful changes to BaseUtils and MathUtils to support a new haplotype score annotation that determines to the two most likely haplotypes over an interval and scores variants by their consistency with a diploid model. Appears to be useful.
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2010-03-28 21:45:22 +00:00 |
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datasources
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An attempt to cleanup the Utils directory. Email to follow.
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2010-04-19 23:00:08 +00:00 |
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examples
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Bug fixes for interval batching in sharding system. Sharding system now batches intervals and passes
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2010-02-05 21:47:54 +00:00 |
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executive
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An attempt to cleanup the Utils directory. Email to follow.
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2010-04-19 23:00:08 +00:00 |
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filters
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An attempt to cleanup the Utils directory. Email to follow.
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2010-04-19 23:00:08 +00:00 |
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io
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An attempt to cleanup the Utils directory. Email to follow.
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2010-04-19 23:00:08 +00:00 |
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iterators
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In the new sharding system, if no read group is present, hallucinate one. Added
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2010-03-07 23:01:34 +00:00 |
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refdata
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Almost done removing any trace of the old Variation and Genotype interfaces.
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2010-04-20 14:52:15 +00:00 |
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traversals
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Fare thee well, oh LocusWindowTraversal.
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2010-03-29 13:17:26 +00:00 |
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walkers
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Moving over to VariationContext in CountCovariates. Removed references to class Variation.
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2010-04-20 13:26:22 +00:00 |
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CommandLineExecutable.java
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An attempt to cleanup the Utils directory. Email to follow.
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2010-04-19 23:00:08 +00:00 |
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CommandLineGATK.java
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An attempt to cleanup the Utils directory. Email to follow.
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2010-04-19 23:00:08 +00:00 |
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GATKErrorReport.java
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An attempt to cleanup the Utils directory. Email to follow.
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2010-04-19 23:00:08 +00:00 |
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GenomeAnalysisEngine.java
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An attempt to cleanup the Utils directory. Email to follow.
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2010-04-19 23:00:08 +00:00 |
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Reads.java
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changes to intelligently log overflowing locus pile-ups.
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2010-01-20 08:09:48 +00:00 |
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WalkerManager.java
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An attempt to cleanup the Utils directory. Email to follow.
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2010-04-19 23:00:08 +00:00 |
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package-info.java
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Put a major.minor version into the GATK Javadoc for reading. Also,
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2010-01-15 21:48:30 +00:00 |
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