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gatk-3.8/public/java/test/org/broadinstitute/sting/gatk
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Mark DePristo b5e843f8f0 Approaching the end for the new RodBinding system 
-- support for explicit naming of bindings (-X:name,type x)
-- support for automatic naming of bindings in lists (-X:vcf foo.vcf -X:vcf bar.vcf will generate internal names X and X2)
-- ParserEngineUnitTest expanded to cover all of the Rodbinding cases
-- RodBindingUnitTest tests all of the low-level accessors
-- Parsing engine throws UserExceptions when bad bindings are provided on the command line
 		2011-08-02 22:00:06 -04:00
..
arguments Updating tools to use the RodBinding<T> syntax 2011-08-02 14:05:51 -04:00
datasources Continuing refactoring of RefMetaDataTracker. 2011-07-28 17:48:28 -04:00
executive Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
filters Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
iterators Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
refdata --variants throughout integrationtests 2011-08-02 20:28:47 -04:00
report Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
traversals Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
walkers --variants throughout integrationtests 2011-08-02 20:28:47 -04:00
EngineFeaturesIntegrationTest.java Approaching the end for the new RodBinding system 2011-08-02 22:00:06 -04:00
GenomeAnalysisEngineUnitTest.java Fixing broken paths to the testdata directory throughout the codebase. 2011-06-29 17:36:47 -04:00
WalkerManagerUnitTest.java Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00