76 lines
3.2 KiB
Java
76 lines
3.2 KiB
Java
/*
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* Copyright (c) 2011, The Broad Institute
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*
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* Permission is hereby granted, free of charge, to any person
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* obtaining a copy of this software and associated documentation
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* files (the "Software"), to deal in the Software without
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* restriction, including without limitation the rights to use,
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* copy, modify, merge, publish, distribute, sublicense, and/or sell
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* copies of the Software, and to permit persons to whom the
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* Software is furnished to do so, subject to the following
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* conditions:
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*
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* The above copyright notice and this permission notice shall be
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* included in all copies or substantial portions of the Software.
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* THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
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* EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES
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* OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
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* NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT
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* HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY,
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* WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
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* FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR
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* OTHER DEALINGS IN THE SOFTWARE.
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*/
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package org.broadinstitute.sting.commandline;
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import org.broadinstitute.sting.BaseTest;
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import org.broadinstitute.sting.utils.variantcontext.VariantContext;
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import org.testng.Assert;
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import org.testng.annotations.Test;
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/**
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* Test suite for the parsing engine.
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*/
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public class RodBindingUnitTest extends BaseTest {
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Tags mytags = new Tags();
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@Test
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public void testStandardRodBinding() {
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RodBinding<VariantContext> b = new RodBinding<VariantContext>(VariantContext.class, "b", "foo", "vcf", mytags);
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Assert.assertEquals(b.getName(), "b");
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Assert.assertEquals(b.getType(), VariantContext.class);
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Assert.assertEquals(b.getSource(), "foo");
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Assert.assertEquals(b.getTribbleType(), "vcf");
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Assert.assertEquals(b.isBound(), true);
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}
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@Test
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public void testUnboundRodBinding() {
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RodBinding<VariantContext> u = RodBinding.makeUnbound(VariantContext.class);
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Assert.assertEquals(u.getName(), RodBinding.UNBOUND_VARIABLE_NAME);
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Assert.assertEquals(u.getSource(), RodBinding.UNBOUND_SOURCE);
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Assert.assertEquals(u.getType(), VariantContext.class);
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Assert.assertEquals(u.getTribbleType(), RodBinding.UNBOUND_TRIBBLE_TYPE);
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Assert.assertEquals(u.isBound(), false);
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}
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@Test
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public void testMultipleBindings() {
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String name = "binding";
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RodBinding<VariantContext> b1 = new RodBinding<VariantContext>(VariantContext.class, name, "foo", "vcf", mytags);
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Assert.assertEquals(b1.getName(), name);
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Assert.assertEquals(b1.getType(), VariantContext.class);
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Assert.assertEquals(b1.getSource(), "foo");
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Assert.assertEquals(b1.getTribbleType(), "vcf");
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Assert.assertEquals(b1.isBound(), true);
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RodBinding<VariantContext> b2 = new RodBinding<VariantContext>(VariantContext.class, name, "foo", "vcf", mytags);
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Assert.assertEquals(b2.getName(), name + "2");
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Assert.assertEquals(b2.getType(), VariantContext.class);
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Assert.assertEquals(b2.getSource(), "foo");
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Assert.assertEquals(b2.getTribbleType(), "vcf");
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Assert.assertEquals(b2.isBound(), true);
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}
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}
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