ebanks b5df2705c9 -Remove Nway output option ... -Remove in-memory sorting -Default to name-sorting (although we allow coordinate sorting with the --sortInCoordinateOrderEvenThoughItIsHighlyUnsafe flag). Cleaner, faster code. Wiki has been updated (including how to use FixMateInformation.jar from Picard). More changes coming soon. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3612 348d0f76-0448-11de-a6fe-93d51630548a		2010-06-22 20:31:55 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src/org/broadinstitute/sting	-Remove Nway output option	2010-06-22 20:31:55 +00:00
test/org/broadinstitute/sting	-Remove Nway output option	2010-06-22 20:31:55 +00:00