kshakir 6dcbf04378 Added gsa-firehose2 ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4284 348d0f76-0448-11de-a6fe-93d51630548a		2010-09-15 02:24:04 +00:00
..
TraverseTest.sh	Move non-java code out of playground.	2009-03-23 19:31:38 +00:00
TraverseTestProf.sh	Move non-java code out of playground.	2009-03-23 19:31:38 +00:00
buildRODs.sh	Move non-java code out of playground.	2009-03-23 19:31:38 +00:00
calcCallerMD5s.csh	Renaming error to getNegLog10PError(); added Cached clearing method to GL; SSG now has a CallResult that counts calls; No more Adding class to System.out, now to logger.info; First major testing piece (and general approach too) to unit testing of a walker -- SingleSampleGenotyper now knows how many calls to make on a particular 1mb region on NA12878 for each call type and counts the number of calls *AND* the compares the geli MD5 sum to the expected one!	2009-09-04 12:39:06 +00:00
makeResources.sh	Version 0.2.1 (released) of the TableRecalibrator	2009-06-25 22:50:55 +00:00
mergeText.sh	Refactoring for a first version of scatter gather api with basic shell script implementations.	2010-06-22 18:39:20 +00:00
queueStatus.csh	Added gsa-firehose2	2010-09-15 02:24:04 +00:00
readStatsDiff.sh	Adding a script for diff'ing the output of samtools and the GATK for the whole genome and each individual chromosome.	2009-06-02 21:19:39 +00:00
runbeagle.sh	a) Add input argument (-ncrate) to BeagleOutputToVCFWalker. If the genotype posterior error probability is higher than this threshold, we declare No-call at this genotype.	2010-07-06 18:33:28 +00:00
splitIntervals.sh	Refactoring for a first version of scatter gather api with basic shell script implementations.	2010-06-22 18:39:20 +00:00