Matt Hanna b65db6a854 First draft of a test script for I/O performance with the new asynchronous I/O processing. ... Also includes convenience parameters for specifying the IO/CPU threading balance outside of a tag. Will be killed when Queue gets better support for tagged arguments (hopefully soon).		2011-11-30 13:13:16 -05:00
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R	Compacting pdfs when running under R 2.13+.	2011-10-27 14:51:56 -04:00
c	Reinitialize random seed in the bwa bindings from the fixed seed stored in the	2011-07-22 13:41:53 -04:00
chainFiles	…
doc	…
java	First draft of a test script for I/O performance with the new asynchronous I/O processing.	2011-11-30 13:13:16 -05:00
packages	No more hunting down R "resources". As a tradeoff Rscript cannot be specified on the commandline and will be found in the environment path.	2011-10-27 14:17:07 -04:00
perl	Update to the bindings for liftOverVCF.pl (to -V from -B)	2011-09-15 15:33:09 -04:00
scala	Queue now outputs a GATK-like header with version number, build timestamp, etc.	2011-11-23 14:28:35 -05:00
testdata	Testdata for IntervalStratification	2011-11-10 11:08:34 -05:00