aaron b543dd4ac4 more aggressive checks for the locking, and some more documentation ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3404 348d0f76-0448-11de-a6fe-93d51630548a		2010-05-20 16:16:36 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src/org/broadinstitute/sting	more aggressive checks for the locking, and some more documentation	2010-05-20 16:16:36 +00:00
test/org/broadinstitute/sting	Removing unused methods in QualityUtils; ReferenceContext now converting all bases to upper case, but can be disabled with static boolean	2010-05-20 12:38:06 +00:00