ebanks 040fdfee61 Cleaned up the interface to VCFRecord. It's now possible (and easy) to create records and then write them with a VCFWriter. ... I've updated HapMap2VCF to use the new interface; Chris agreed to take care of Sequenom2VCF. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2558 348d0f76-0448-11de-a6fe-93d51630548a		2010-01-11 21:42:12 +00:00
..
duplicates	forgot to update md5s	2009-12-29 20:31:29 +00:00
poolseq	Added - new tests (Hapmap was re-added)	2009-12-14 21:57:20 +00:00
varianteval	Fix to isReference() in VCFRecord. Change to VariantCounter to correctly counter only non-genotype variants, as well as update to VariantEvalWalker	2010-01-07 00:03:29 +00:00
variantstovcf	Cleaned up the interface to VCFRecord. It's now possible (and easy) to create records and then write them with a VCFWriter.	2010-01-11 21:42:12 +00:00
ClipReadsWalkersIntegrationTest.java	moved hard-coded file paths to the oneKGLocation, validationDataLocation, and seqLocation variables setup in the BaseTest.	2009-12-29 07:40:48 +00:00
ConcordanceTruthTableTest.java	First revision of command-line argument support for GenotypeWriter. Also, fixed the damn build.	2009-12-20 19:19:23 +00:00
HapmapPoolAllelicInfoIntegrationTest.java	Hurrr -- this uses power as part of its output. Changes to the power calculation broke the md5s RIGHT AFTER I HAD FIXED THEM arghflrg.	2009-12-14 22:42:50 +00:00