rpoplin b51f4aae11 Updating the recalibrator to make use of StingSAMFileWriter. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2566 348d0f76-0448-11de-a6fe-93d51630548a		2010-01-12 20:58:27 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src	Updating the recalibrator to make use of StingSAMFileWriter.	2010-01-12 20:58:27 +00:00
test/org/broadinstitute/sting	The recalibrator now uses all input RODs when looking for known polymorphic sites not just the one named dbsnp. Added an integration test which uses both dbsnp and an input vcf file and skips over the union of the two.	2010-01-12 18:50:39 +00:00