Ryan Poplin ac033ce41a Intermediate commit of new bubble assembly graph traversal algorithm for the HaplotypeCaller. Adding functionality for a path from an assembly graph to calculate its own cigar string from each of the bubbles instead of doing a massive Smith-Waterman alignment between the path's full base composition and the reference.		2013-01-31 11:32:19 -05:00
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src/org/broadinstitute/sting	Intermediate commit of new bubble assembly graph traversal algorithm for the HaplotypeCaller. Adding functionality for a path from an assembly graph to calculate its own cigar string from each of the bubbles instead of doing a massive Smith-Waterman alignment between the path's full base composition and the reference.	2013-01-31 11:32:19 -05:00
test/org/broadinstitute/sting	Merge branch 'master' of github.com:broadinstitute/gsa-unstable	2013-01-31 10:12:26 -05:00