depristo b4c479bcb0 Support for reducedReads in the pileup and UG. Totally experimental -- the code interface could change, and so could the implementation. Only works for SNPs now. Pileup has contracts as well. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5936 348d0f76-0448-11de-a6fe-93d51630548a		2011-06-03 16:39:01 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src	Support for reducedReads in the pileup and UG. Totally experimental -- the code interface could change, and so could the implementation. Only works for SNPs now. Pileup has contracts as well.	2011-06-03 16:39:01 +00:00
test	No one should be calling the createHeader method(s) directly, but instead should be going through the full readHeader method (because it first sets the version); therefore I made them package protected and merged them. Updated the various unit tests that were using createHeader and were dangerously assuming that the header version was defaulting to 4.0 (which it no longer does).	2011-06-03 02:17:37 +00:00