hanna b4b4e8d672 For Sarah Calvo: initial implementation of read pair traversal, for BAM files ... sorted by read name. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3052 348d0f76-0448-11de-a6fe-93d51630548a		2010-03-21 23:22:25 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src/org/broadinstitute/sting	For Sarah Calvo: initial implementation of read pair traversal, for BAM files	2010-03-21 23:22:25 +00:00
test/org/broadinstitute/sting	Moving VariantFiltration over to use VariantContext.	2010-03-19 18:35:23 +00:00