Tad Jordan b491c177ff Added functionality of outputting sorted GATKReport Tables ... - Added an optional argument to BaseRecalibrator to produce sorted GATKReport Tables - Modified BSQR Integration Tests to include the optional argument. Tests now produce sorted tables		2012-12-20 14:02:21 -05:00
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bqsr	Added functionality of outputting sorted GATKReport Tables	2012-12-20 14:02:21 -05:00
compression/reducereads	RR bug fix: we were failing when a read started with an insertion just at the edge of the consensus region.	2012-12-19 10:59:07 -05:00
genotyper	Merge branch 'master' of github.com:broadinstitute/gsa-unstable	2012-12-19 11:31:40 -05:00
haplotypecaller	Merge branch 'master' of github.com:broadinstitute/gsa-unstable	2012-12-19 11:31:40 -05:00