gatk-3.8/public/java
Mark DePristo b4841548f1 Bug fixes and misc. improvements to running the adaptive context tools
-- Better output file name defaults
-- Fixed nasty bug where I included non-existant quals in the contexts to process because they showed up in the Cycle covariate
-- Data is processed in qual order now, so it's easier to see progress
-- Logger messages explaining where we are in the process
-- When in UPDATE mode we still write out the information for an equivalent prune by depth for post analysis
2012-08-06 11:42:55 -04:00
..
config Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
src Bug fixes and misc. improvements to running the adaptive context tools 2012-08-06 11:42:55 -04:00
test Ready for full-scale evaluation adaptive BQSR contexts 2012-08-03 16:02:53 -04:00