Mark DePristo 0cc5c3d799 General improvements to Queue ... -- Support for collecting resources info from DRMAA runners -- Disabled the non-standard mem_free argument so that we can actually use our own SGE cluster gsa4 -- NCoresRequest is a testing queue script for this. -- Added two command line arguments: -- multiCoreJerk: don't request multiple cores for jobs with nt > 1. This was the old behavior but it's really not the best way to run parallel jobs. Now with queue if you run nt = 4 the system requests 4 cores on your host. If this flag is thrown, though, it will only request 1 and you'll just use 4, like a jerk -- job_parallel_env: parallel environment named used with SGE to request multicore jobs. Equivalent to -pe job_parallel_env NT for NT > 1 jobs		2011-12-20 14:05:09 -05:00
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qscript/org/broadinstitute/sting/queue/qscripts	When using bam list mode in HSP deriving VCF name from bam list instead of requiring an additional parameter.	2011-12-16 18:09:25 -05:00
src/org/broadinstitute/sting/queue	General improvements to Queue	2011-12-20 14:05:09 -05:00
test/org/broadinstitute/sting/queue	Removing cruft that snuck in last commit.	2011-12-16 23:00:16 -05:00