ebanks b468369dfa -UG's call into VariantAnnotator now uses the full alignment context (as opposed to the filtered one) ... -MQ0 annotation is now standard again -Added AC and AN annotations to VCF output git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2545 348d0f76-0448-11de-a6fe-93d51630548a		2010-01-08 05:40:42 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src	-UG's call into VariantAnnotator now uses the full alignment context (as opposed to the filtered one)	2010-01-08 05:40:42 +00:00
test/org/broadinstitute/sting	-UG's call into VariantAnnotator now uses the full alignment context (as opposed to the filtered one)	2010-01-08 05:40:42 +00:00