Joel Thibault 3e52ce5fa8 Remove DepthOfCoverage.java because it is no longer public ... - Move Pileup.java and PrintReads.java to their new homes		2013-01-10 11:45:38 -05:00
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Aligner.xml	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
CreatePackager.xsl	Build system round 2: finished preparing the packaging system for dual protected/lite releases	2012-05-29 13:54:51 -04:00
GATKEngine.xml	Remove DepthOfCoverage.java because it is no longer public	2013-01-10 11:45:38 -05:00
GenomeAnalysisTK.xml	Removed 'Walker' suffix from packages/GATKEngine.xml that were breaking the packaged release.	2012-07-23 16:32:31 -04:00
GenomeAnalysisTKLite.xml	Removed 'Walker' suffix from packages/GATKEngine.xml that were breaking the packaged release.	2012-07-23 16:32:31 -04:00
PicardPrivate.xml	Revved Picard to incorporate tfennell's AsyncSAMFileWriter.	2011-12-06 10:37:42 -05:00
Queue.xml	Removed 'Walker' suffix from packages/GATKEngine.xml that were breaking the packaged release.	2012-07-23 16:32:31 -04:00
QueueEngine.xml	Build system round 2: finished preparing the packaging system for dual protected/lite releases	2012-05-29 13:54:51 -04:00
QueueLite.xml	Removed 'Walker' suffix from packages/GATKEngine.xml that were breaking the packaged release.	2012-07-23 16:32:31 -04:00