Mark DePristo 592f90aaef ActivityProfile now cuts intelligently at the best local minimum when in a larger than max size active region ... -- This new algorithm is essential to properly handle activity profiles that have many large active regions generated from lots of dense variant events. The new algorithm passes unit tests and passes visualize visual inspection of both running on 1000G and NA12878 -- Misc. commenting of the code -- Updated ActiveRegionExtension to include a min active region size -- Renamed ActiveRegionExtension to ActiveRegionTraversalParameters, as it carries more than just the traversal extension now		2013-01-24 13:48:00 -05:00
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ActivityProfileStateUnitTest.java	Restructure ActivityProfiler into root class ActivityProfile and derived class BandPassActivityProfile	2013-01-23 13:45:21 -05:00
ActivityProfileUnitTest.java	ActivityProfile now cuts intelligently at the best local minimum when in a larger than max size active region	2013-01-24 13:48:00 -05:00
BandPassActivityProfileUnitTest.java	Adaptively compute the band pass filter from the sigma, up to a maximum size of 50 bp	2013-01-24 13:47:59 -05:00