David Roazen cdb1fa1105 Fix more tests that fail when run in parallel on the farm ... -Allow the default S3 put timeout of 30 seconds for GATKRunReports to be overridden via a constructor argument, and use a timeout of 300 seconds for tests. The timeout remains 30 seconds in all other cases. -Change integration tests that themselves dispatch farm jobs into pipeline tests. Necessary because some farm nodes are not set up as submit hosts. Pipeline tests are still run directly on gsa4. -Bump up the timeout for the MaxRuntimeIntegrationTest even more (was still occasionally failing on the farm!)		2013-03-12 16:53:30 -04:00
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commandline	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00
gatk	Fix more tests that fail when run in parallel on the farm	2013-03-12 16:53:30 -04:00
jna	Fix more tests that fail when run in parallel on the farm	2013-03-12 16:53:30 -04:00
utils	Fix tests that were consistently or intermittently failing when run in parallel on the farm	2013-03-06 13:56:54 -05:00
BaseTest.java	Replace org.broadinstitute.variant with jar built from the Picard repo	2013-02-05 17:24:25 -05:00
ExampleToCopyUnitTest.java	Replace org.broadinstitute.variant with jar built from the Picard repo	2013-02-05 17:24:25 -05:00
MD5DB.java	Encrypt GATK AWS keys using the GATK private key, and decrypt as needed as a resource when uploading to AWS logs	2013-01-30 16:42:23 -05:00
MD5Mismatch.java	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00
StingTextReporter.java	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00
TestNGTestTransformer.java	Fix tests that were consistently or intermittently failing when run in parallel on the farm	2013-03-06 13:56:54 -05:00
WalkerTest.java	Replace org.broadinstitute.variant with jar built from the Picard repo	2013-02-05 17:24:25 -05:00