aaron b3edb7dc08 two fixes for the VCF 4 parser: ... - Allow the "GT" field in genotypes at any point in the genotype string (before we required they be the first key-value pair). - Fix a bug with the phasing value put into the VariantContext, thanks for the catch Guillermo! git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3638 348d0f76-0448-11de-a6fe-93d51630548a		2010-06-25 18:01:23 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src/org/broadinstitute/sting	two fixes for the VCF 4 parser:	2010-06-25 18:01:23 +00:00
test/org/broadinstitute/sting	two fixes for the VCF 4 parser:	2010-06-25 18:01:23 +00:00