gatk3的最后一个经典版本3.8

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Valentin Ruano-Rubio b39508cd15 ReadLikelihoods class introduction final changes before merging Stories: https://www.pivotaltracker.com/story/show/70222086 https://www.pivotaltracker.com/story/show/67961652 Changes: Done some changes that I missed in relation with making sure that all PairHMM implentations use the same interface; as a consequence we were running always the standard PairHMM. Fixed some additional bugs detected when running it on full wgs single sample and exom multi sample data set. Updated some integration test md5s.		2014-08-11 17:47:25 -04:00
licensing	deleted old license files	2013-07-02 16:36:47 -04:00
protected	ReadLikelihoods class introduction final changes before merging	2014-08-11 17:47:25 -04:00
public	ReadLikelihoods class introduction final changes before merging	2014-08-11 17:46:28 -04:00
settings/helpTemplates	Various documentation improvements	2014-07-14 12:03:03 -04:00
.gitignore	Fixed bug using GraphBased due to infinite likelihoods resulting from the calculation of alignment cost of very long insertion or deletions (done in linear scale)	2014-04-01 16:14:52 -04:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
ant-bridge.sh	Refactored maven directories and java packages replacing "sting" with "gatk".	2014-05-19 17:36:39 -04:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
pom.xml	Update pom versions to mark the start of GATK 3.3 development	2014-07-17 12:09:33 -04:00

README.md

The Genome Analysis Toolkit

See http://www.broadinstitute.org/gatk/