gatk-3.8/java/src/org/broadinstitute/sting/playground/gatk
jmaguire 961dbbd4ef Now output bases and qhat and qstar into the GFF.
Quals coming soon (four-base)

QHAT  : Most likely alt allele freq (unconstrained by number of chromosomes).
QSTAR : Most likely alt allele freq (constrained by number of chromosomes).





git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@402 348d0f76-0448-11de-a6fe-93d51630548a
2009-04-14 15:23:00 +00:00
..
iterators Support for dynamically merging data files. Preliminary only -- everything in these systems is still being tested 2009-03-26 14:40:50 +00:00
walkers Now output bases and qhat and qstar into the GFF. 2009-04-14 15:23:00 +00:00
PrepareROD.java New ROD accessing system, including a generalized interface for binding ROD on the command line that doesn't require you to chance GenomeAnalysisTK.java 2009-04-09 22:04:59 +00:00