gatk-3.8/perl/sync1000Genomes
ebanks 63f40215b3 2 more scripts I found helpful in syncing (and cleaning up) the 1000G mirror
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5287 348d0f76-0448-11de-a6fe-93d51630548a
2011-02-22 04:17:36 +00:00
..
README.sync
checkMD5s.pl 2 more scripts I found helpful in syncing (and cleaning up) the 1000G mirror 2011-02-22 04:17:36 +00:00
findFilesNotInAlignmentIndex.sh 2 more scripts I found helpful in syncing (and cleaning up) the 1000G mirror 2011-02-22 04:17:36 +00:00
runAspera.pl
runWget.pl
syncFilesInList.pl

README.sync

Before sync'ing 1000 Genomes, you need to be logged in as gsa-dev:
% sudo -s -u gsa-dev
[Note that this step needs to be done before subsequent steps for stability]

To use Aspera, you'll need to ssh into one of the appropriate machines:
% ssh vbigtube or mirror

[The NCBI Aspera source is: anonftp@ftp-private.ncbi.nih.gov:/1000genomes/ftp/]