13 lines
497 B
Bash
Executable File
13 lines
497 B
Bash
Executable File
#!/bin/sh
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STING_HOME=/humgen/gsa-hpprojects/dev/kshakir/src/Sting_patches
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TMP_DIR=/broad/shptmp/kshakir
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JOB_QUEUE=gsa
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if [ "$1" == "debug" ]; then
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JAVA_DEBUG="-Xdebug -Xrunjdwp:transport=dt_socket,server=y,suspend=n,address=8555"
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shift
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fi
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java $JAVA_DEBUG -Djava.io.tmpdir="$TMP_DIR" -jar "$STING_HOME"/dist/Queue.jar -jobPrefix QTest -S "$STING_HOME"/scala/qscript/kshakir/UGMemoryTests.scala -Y UGMemoryTests.yaml -gatk "$STING_HOME"/dist/GenomeAnalysisTK.jar -jobQueue $JOB_QUEUE $@
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