Ryan Poplin b81494b704 Merge pull request #499 from broadinstitute/eb_fix_ad_updates ... Fixed bug in generating AD values when new alleles are present for genot...		2014-02-09 17:55:00 -05:00
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c	At chartl's request, add the bwa aln -N and bwa aln -m parameters to the bindings.	2012-01-17 14:47:53 -05:00
chainFiles	…
doc	Fixed issues raised by Appistry QA (mostly small fixes, corrections & clarifications to GATKDocs)	2013-03-12 10:57:14 -04:00
external-example	Added a set of serial tests to gatk/queue packages, which runs all tests under their package in one TestNG execution.	2014-02-06 08:25:38 -05:00
gatk-framework	Fixed bug in generating AD values when new alleles are present for genotpying GVCFs.	2014-02-09 15:15:19 -05:00
gatk-package	Packages link private/testdata, so that mvn test -Dsting.serialunittests.skipped=false works.	2014-02-06 08:25:38 -05:00
gatk-queue-extgen	Bumped version to 2.8-SNAPSHOT, using new update_pom_versions.sh script.	2014-02-03 13:50:46 -05:00
gsalib	Added a set of serial tests to gatk/queue packages, which runs all tests under their package in one TestNG execution.	2014-02-06 08:25:38 -05:00
java/config	Moved files to maven directories.	2014-02-03 13:50:44 -05:00
package-tests	Added a set of serial tests to gatk/queue packages, which runs all tests under their package in one TestNG execution.	2014-02-06 08:25:38 -05:00
perl	Fixing the liftover script to not require strict VCF header validation.	2013-11-07 09:02:17 -05:00
queue-framework	Added a set of serial tests to gatk/queue packages, which runs all tests under their package in one TestNG execution.	2014-02-06 08:25:38 -05:00
queue-package	Packages link private/testdata, so that mvn test -Dsting.serialunittests.skipped=false works.	2014-02-06 08:25:38 -05:00
repo	Removed use of picard private.	2014-02-09 17:08:52 +08:00
sting-root	Removed use of picard private.	2014-02-09 17:08:52 +08:00
sting-utils	Added a set of serial tests to gatk/queue packages, which runs all tests under their package in one TestNG execution.	2014-02-06 08:25:38 -05:00
pom.xml	Bumped version to 2.8-SNAPSHOT, using new update_pom_versions.sh script.	2014-02-03 13:50:46 -05:00