--modified ivy dependencies --modified scala classpath in build.xml to include scala-reflect --changed imports to point to the new scala scala.reflect.internal.util --set the bootclasspath in QScriptManager as well as the classpath variable. --removing Set[File] <-> Set[String] conversions ----Set is invariant now and the conversions broke --removing unit tests for Set[File] <-> Set[String] conversions |
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|---|---|---|
| .. | ||
| qscript/org/broadinstitute/sting/queue/qscripts | ||
| src/org/broadinstitute/sting/queue | ||
| test/org/broadinstitute/sting/queue | ||