gatk-3.8/public/scala
Louis Bergelson b32ad99d3f Changing from scala 2.9.2 to 2.10.2.
--modified ivy dependencies
--modified scala classpath in build.xml to include scala-reflect

--changed imports to point to the new scala scala.reflect.internal.util

--set the bootclasspath in QScriptManager as well as the classpath variable.

--removing Set[File] <-> Set[String] conversions
----Set is invariant now and the conversions broke
--removing unit tests for Set[File] <-> Set[String] conversions
2013-09-23 12:42:22 -04:00
..
qscript/org/broadinstitute/sting/queue/qscripts Now that we don't generate dict and fai files, the resource script needs to copy them to the bundle. 2013-05-02 15:18:13 -04:00
src/org/broadinstitute/sting/queue Changing from scala 2.9.2 to 2.10.2. 2013-09-23 12:42:22 -04:00
test/org/broadinstitute/sting/queue Changing from scala 2.9.2 to 2.10.2. 2013-09-23 12:42:22 -04:00