carneiro 6d3b878dde data processing pipeline script already does: ... . Local Indel Realignment . Mark Duplicates will do: . Base Quality Score Recalibration (soon) it's working with a single BAM for testing, but will work with a list of bam files. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5250 348d0f76-0448-11de-a6fe-93d51630548a		2011-02-15 21:49:05 +00:00
..
dataProcessing.scala	data processing pipeline script already does:	2011-02-15 21:49:05 +00:00
pbCalling.scala	small updates to the variant eval part of the pipeline, some updates to the pacbio specific pipeline.	2011-02-15 16:19:07 +00:00