Eric Banks bad7865078 When converting a haplotype to a set of variants we now check for cases that are overly complex. ... In these cases, where the alignment contains multiple indels, we output a single complex variant instead of the multiple partial indels. We also re-enable dangling tail recovery by default.		2014-07-01 14:18:59 -04:00
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main/java/org/broadinstitute/gatk	When converting a haplotype to a set of variants we now check for cases that are overly complex.	2014-07-01 14:18:59 -04:00
test/java/org/broadinstitute/gatk	When converting a haplotype to a set of variants we now check for cases that are overly complex.	2014-07-01 14:18:59 -04:00