gatk3的最后一个经典版本3.8

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Ryan Poplin b22c9c2cb4 Improvements to the reference model pipeline. -- We use the RegenotypeVariants walker to recompute the qual field. (instead of the discussed idea of adding this functionality to CombineVariants) -- QualByDepth will now be recomputed even if the stratified contexts are missing. This greatly improves the QD estimate for this pipeline. Doesn't work for multi-allelics since the qual can't be recomputed.		2013-11-01 17:58:25 -04:00
licensing	deleted old license files	2013-07-02 16:36:47 -04:00
protected	Improvements to the reference model pipeline.	2013-11-01 17:58:25 -04:00
public	Improvements to the reference model pipeline.	2013-11-01 17:58:25 -04:00
settings	Modify gatkdoc template to handle downsampling info better	2013-09-26 14:50:32 -04:00
.gitignore	Detect stuck lock-acquisition calls, and disable file locking for tests	2013-04-24 22:49:02 -04:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
build.xml	Resolving warnings	2013-09-23 12:42:22 -04:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Changing from scala 2.9.2 to 2.10.2.	2013-09-23 12:42:22 -04:00

The Genome Analysis Toolkit