Mark DePristo b20689ff55 No longer supports extraProperties ... -- the underlying data structure is still present, but until I decide what to do for the extensible system I've completely disabled the subsystem -- Added code to merge Samples, so that a mostly full record can be merged with a consistent empty record. If the two records are inconsistent, an error is thrown -- addSample() in Sample.class now invokes mergeSample() when appropriate -- Validation types are now only STRICT or SILENT -- Validation code implemented in SampleDBBuilder -- Extensive unit tests for SampleDBBuilder		2011-10-03 19:20:33 -07:00
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net/sf	Removed annoying FastaSequenceIndexBuilderProgressListener infrastructure that was just a boolean switch on whether to print progress or not.	2011-07-27 22:06:23 -04:00
org/broadinstitute/sting	No longer supports extraProperties	2011-10-03 19:20:33 -07:00