Mark DePristo b20689ff55 No longer supports extraProperties ... -- the underlying data structure is still present, but until I decide what to do for the extensible system I've completely disabled the subsystem -- Added code to merge Samples, so that a mostly full record can be merged with a consistent empty record. If the two records are inconsistent, an error is thrown -- addSample() in Sample.class now invokes mergeSample() when appropriate -- Validation types are now only STRICT or SILENT -- Validation code implemented in SampleDBBuilder -- Extensive unit tests for SampleDBBuilder		2011-10-03 19:20:33 -07:00
..
R	Merge branch 'master' into sgintervals	2011-09-19 09:50:19 -04:00
c	Reinitialize random seed in the bwa bindings from the fixed seed stored in the	2011-07-22 13:41:53 -04:00
chainFiles	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
doc	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
java	No longer supports extraProperties	2011-10-03 19:20:33 -07:00
packages	Fixed Ant / PluginManager issue where reflections was picking up all class files under current working directory due to "." in jar manifest classpaths.	2011-09-27 14:33:57 -04:00
perl	Update to the bindings for liftOverVCF.pl (to -V from -B)	2011-09-15 15:33:09 -04:00
scala	Merged bug fix from Stable into Unstable	2011-09-27 14:34:39 -04:00
testdata	Adding bgzip vcf file for unit tests	2011-09-21 15:39:45 -04:00