carneiro 7af003666d added optional argument -cut to apply the variant cut to the ts recalibrated vcf. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5183 348d0f76-0448-11de-a6fe-93d51630548a		2011-02-03 17:34:40 +00:00
..
chartl	Fixing import GenotypeCalculationModel since it doesn't exist anymore.	2011-02-02 15:39:43 +00:00
delangel	Script for calling indels in all phase 1 samples - VQSR part still needs work but raw calling is done	2011-01-22 14:07:10 +00:00
depristo	Take (partial) ownership of phasing 1000G chr20 calls	2011-01-31 21:49:41 +00:00
fromer	Corrected input/output definitions for Queue	2011-02-02 07:39:00 +00:00
hanna	Refactoring the qscript directory; oneoffs, playground, and core	2011-01-19 15:23:40 +00:00
kshakir	Refactoring the qscript directory; oneoffs, playground, and core	2011-01-19 15:23:40 +00:00
rpoplin	added optional argument -cut to apply the variant cut to the ts recalibrated vcf.	2011-02-03 17:34:40 +00:00
QTools.q	Bug fixes in the in process function (spoiled by python: was not closing my writers). SortByRef now works somewhat like the perl script does, rather than doing a memory-expensive sort. Adding a QTools qscript which is kinda clunky, and will be used mostly for integration tests of these IPFs, pending some better way to construct argument collections and function accessors at compile-time.	2011-02-03 17:32:46 +00:00