carneiro 7af003666d added optional argument -cut to apply the variant cut to the ts recalibrated vcf. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5183 348d0f76-0448-11de-a6fe-93d51630548a		2011-02-03 17:34:40 +00:00
..
qscript	added optional argument -cut to apply the variant cut to the ts recalibrated vcf.	2011-02-03 17:34:40 +00:00
src/org/broadinstitute/sting	Bug fixes in the in process function (spoiled by python: was not closing my writers). SortByRef now works somewhat like the perl script does, rather than doing a memory-expensive sort. Adding a QTools qscript which is kinda clunky, and will be used mostly for integration tests of these IPFs, pending some better way to construct argument collections and function accessors at compile-time.	2011-02-03 17:32:46 +00:00
test/org/broadinstitute/sting/queue	If there's an LSF queue maximum time limit set and the user hasn't specified one for this job, pass on the queue defined maximum limit with the job.	2011-01-31 23:13:09 +00:00