David Benjamin b1f2301dd3 Add downsampling arguments to Mutect ... - maxReadsInRegionPErSample, minReadsPerAlignment start are now M2 args - maxReadsInMemoryPerSample is an activeRegionWalker arg		2016-12-05 14:12:22 -05:00
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main	Add downsampling arguments to Mutect	2016-12-05 14:12:22 -05:00
test/java/org/broadinstitute/gatk	Merge pull request #1517 from broadinstitute/rhl_adapter_boundary_err_1406	2016-11-18 10:25:46 -05:00